The Master Archer

The Master Archer

▶ Lurking under the water surface in the estuaries and mangroves of India and Polynesia, the archer fish Toxotes (from the Greek Τοξοτης for archer) precisely aims a ballistic jet of water that knocks off a hapless insect from the shrubbery above, sending it tumbling into the water where it is promptly devoured. To dislodge prey anchored firmly to the vegetation with forces up to 10 times their body weight, the water jet must achieve a power of 3000 Watts/kg within a fraction of a second. Since this intrepid hunter was first described 250 years ago, scientists have puzzled over this mastery of archery.

Fishy Physics: Biologists first considered a mechanism similar to the chameleon, where energy is stored in coils of collagen inside the tongue (explained in the Chameleon Catapult post http://goo.gl/B5fPVS). But dissection of the archer fish revealed no such specialized structure. Besides, they calculated that muscle power could maximally account for ~15% of the observed force of the water jet. Researchers then resorted to analysis of high speed video recordings of the archer fish in action. What they saw was a thin jet of water with a “head” that becomes increasingly bigger during flight. Surface tension and inertia hold the head together, pushing the tail jet into the head forming hammer-like pellet which strikes with deadly force. A fancy term for this is hydrodynamic amplification, and the physicists among you may enjoy reading about the “Ohnesorge number” and “Rayleigh-Plateu Instability” in the referenced paper. The rest of us will be intrigued by the similarity to Drop on Demand Inkjet Printing which similarly uses an explosively ejected drop of ink, as in Canon’s Bubble Jet printer (http://en.wikipedia.org/wiki/Inkjet_printing). The archer fish achieves all this at a low evolutionary cost by gulping a small amount of air into a gun-barrel shaped groove in its mouth and closing its gills before delivery. Just like Diana the huntress amplified her muscle power with a bow, this little fish also exploits an external hydrodynamic lever to capture its prey.

REF: Vailati et al. (2012)  PloS ONE; open access http://goo.gl/DHZ1C 

H/T to PJ Rosenberg for inspiring this post with the gif image he shared to the Science on Google+ community (http://goo.gl/fPDy2u).

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Jellies to GFP

Jellies to GFP

The Story: Drifting along the currents off the west coast of N. America, the jellyfish Aequoria victoria gives off bursts of blue luminescence when a protein called aequorin binds calcium. The blue light is absorbed by another protein with the unimaginative name of green fluorescent protein (GFP), and the jellyfish now glows…surprise…green! After scientist Osamu Shimomura first observed that GFP could fluoresce independently of any added factors, Doug Prasher cloned the GFP gene and worked out its DNA sequence. At Prasher’s seminar, Martin Chalfie realized the potential of GFP: he could insert the gene behind any promoter (on switch) and the cell would glow green when the gene was turned on. Prasher handed out the cloned gene to Chalfie and hundreds of labs. This led to a multitude of uses of GFP, now a favorite workhorse in any research lab. Roger Tsien tinkered with the gene to generate a rainbow of different colors. Sadly, when Shimomura, Chalfie and Tsien were awarded a Nobel (in 2008) for their work, Prasher was conspicuously omitted, because no more than 3 can share the prize. Worse, he was out of a job by then, driving a courtesy shuttle bus for Toyota (apparently he is back in lab now). Still, Prasher expressed his delight over the Nobel, and he was invited to the ceremony and publicly thanked by his more fortunate colleagues.To paraphrase Newton, if we have seen further, it is by standing on the shoulders of giants

The Science: GFP is built like a barrel of crisscrossing ribbons known as beta strands. Nestled in the middle, is a strange cyclical arrangement that spontaneously forms from three consecutive amino acids (Serine, Tyrosine, Glycine or SYG in their single letter code). It is this cyclical arrangement that gives GFP the ability to fluoresce. The same sequence in other proteins does not cyclize or fluoresce. Adjusting the environment around this changes the spectral properties (color), stability (so it can be used in warm blooded animals), and regulation (by pH or ions). 

The Gift: Oh GFP, how do I love thee? Let me count the ways. Care to snoop on the business of your favorite protein? Tag it with GFP and become a video voyeur, watching it move in a living cell. Want to measure the pH (acidity) of a cell? There’s a pH-sensitive GFP mutant named pHluorin for that. Curious if two proteins interact? Tag one with YFP (glows yellow), another with CFP (glows cyan). When they come together, the emission from CFP activates YFP and you get a yellow signal. Create a Brainbow by genetically mixing GFP variants so each neuron is colored differently. Can you blame me for the bad poetry? 🙂

Pop Sci: http://imgur.com/gallery/krNEH

Nobel Lectures: Follow the links in http://goo.gl/51d40L #ScienceEveryday    

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Do You Like Green Eggs And Ham?

Do You Like Green Eggs And Ham?

Yes, I like them, Sam-I-Am

White eggs, Brown eggs,  Pink ones too

But Tell me, how Do they turn Blue?

(With apologies to Dr. Seuss) 

Egg color in birds evolved for obvious reasons of camouflage and recognition, and for less obvious reasons such as thermal regulation, protection against UV light, and even antimicrobial defense. Chicken eggs are commonly white (no pigment), or brown (protoporphyrin). Rare breeds from China and Chile lay blue eggs, colored by the bile pigment biliverdin, a breakdown product of the hemoglobin in red blood cells.  Biliverdin is normally excreted by liver cells into the bile. So how does it end up in the egg shell? 

Organic anion transporters are proteins that move a large number of compounds- drugs, toxins, hormones and bile pigments, across cell membranes, as part of the liver’s detoxifying day job. Genetic sleuthing mapped the blue color trait to a region of a chicken chromosome. Here was a gene for a transporter protein, SLCO1B3, that could provide blue-green biliverdin to color the shell. But why was the gene inexplicably turned on only in the shell gland of the blue egg laying chicken?

Endogenous retroviruses (ERV) are ancient viruses that inserted randomly into the genomes of prehistoric birds. One such viral fragment inserted right next to the SLCO1B3 gene in blue egg laying chickens, where it behaved like an accidental transcription enhancer, or “on switch”. Because of its sequence, scientists speculate that it mediates estrogen specific regulation, accounting for the high levels of the biliverdin transport protein in the shell gland. Although this story nicely explains our Seussian curiosity about green eggs and ham, it also shows how viruses shape diversity in the living world. For example, an insertion of the avian leukosis virus inside a gene for the enzyme tyrosinase results in white plumage in chickens. Viral insertions can also be incredibly harmful, triggering cancer when they accidentally turn on oncogenes.

REFS (open access papers): http://goo.gl/3yJ1FS and http://goo.gl/ypZyCF

Fun Fact: Green Eggs and Ham, published in 1960, is one of the best selling and most beloved children’s books of all time. It has just 50 words, and was written by Dr. Seuss in response to a bet by his publisher. 

Photo: Tammy Riojas, Elgin, TX;

H/T to Lorna Salgado for posting the news story that led to this   #ScienceSunday  post. 

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The Beat Goes On

The Beat Goes On 

The Cardiomyocyte: Your heart beats about 72 times per minute, or 100,000 times a day, clocking an average of 2.5 billion times in a lifetime and working harder than any other muscle in your body. After all, it has to pump some 2000 gallons of blood around 60 miles of blood vessels each day. No matter how hard you train, the skeletal muscles of your arms or legs could never keep this up. So spare some love for the cardiac muscle cell, or cardiomyocyte

The Pacemaker: The heart marches to its own tune, unlike the skeletal muscle which gets direct input from a motor nerve. Indeed, the heart would be an unwieldy mess if each individual fiber needed a motor nerve connection.  Instead, every beat of the heart starts within the sinoatrial node (SAN) containing <10,000 pacemaker cells equipped with a built-in clockwork mechanism to fire rhythmically. These electrical impulses spread through the muscle fibers by direct communication from cell to cell via  special channels called gap junctions, that synchronize the contraction. If the pacemaker fails, the ~5 billion working cardiomyocytes don’t get their marching orders and the heart slows down or becomes arrhythmic. Promising new research aims to convert ordinary cardiomyocytes to pacemaker cells by expressing a master regulator gene, Tbx18 to replace those lost by disease or defects.

Sparks and Stripes: Each cardiomyocyte is packed with ordered arrays of thin and thick filaments that slide past each other to make the muscle contract. The thin filaments are made of actin seen as red stripes in the image. The thick filaments are an assembly line of myosin motors that use a rowing motion to pull on the actin filaments. In the absence of an electrical signal, the muscle is relaxed, with the filaments kept apart by a guardian protein called troponin C. The magical molecule that sets the contraction in motion is calcium, seen in the gif as sparks and waves. Each electrical impulse releases a packet of calcium that binds to troponin C, and moves it out of the way to trigger contraction. But the calcium is quickly captured (by calcium pumps and exchangers) and moved back into stores, so the muscle relaxes..before it all begins again.  

Another installment in the   #excyting series on cell types.

Adipocyte: http://goo.gl/S4fQFS

Erythrocyte: http://goo.gl/R5R6Y0

Astroycte: http://goo.gl/SMpXMV

REF: Direct conversion of quiescent cardiomyocytes to pacemaker cells by expression of Tbx18. Kapoor et al., 2013 http://www.nature.com/nbt/journal/v31/n1/full/nbt.2465.html

IMAGE: Composite put together by Kevin Staff from http://goo.gl/r8wpX8 and  http://goo.gl/1aWsYk . Thanks, Kevin!

SONNY & CHER “THE BEAT GOES ON” (1967) ORIGINAL RECORDING

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Crowd Fund a Biological Computer

Crowd Fund a Biological Computer

Please consider helping our G+ colleague, Gerd Moe-Behrens crowd fund CytoComp and win a Stanford University competition. He’ll be happy to tell you all about Bitcoins too. 

#ScienceEveryday   #ScienceSunday  

Originally shared by ScienceSunday

Crowd Funding CytoComp

CytoComp is a revolutionary biological computer. Gerd Moe-Behrens is seeking YOUR help to fund this project. For details, see:  http://cytocomp-bitstarter-mooc.herokuapp.com

Help CytoComp win: The crowd funder page for CytoComp is participating in a competition arranged by Stanford University. So far is CytoComp among the Top10Social (number of Tweets), more specific on 3rd place 3 in a class which started with 100 000 people. see the leader board http://startupmooc.org The winner will get additional support from Stanford Univ. for the project.

Made by MOOC: This page was build in the frame of Stanford University MOOC class, Startup Engineering by Balaji S. Srinivasan, Vijay S. Pande https://www.coursera.org/course/startup “Learn the engineering skills needed to build a technology startup from the ground up.” Gerd  built and coded this crowd funding page from the ground up. This is a particularly important approach, as genetically engineered organisms are now banned by Kickstarter. As government funds become less generous, this approach might be interesting for many. Contact Gerd Moe-Behrens to find out how to do this. 

Please share and help our fellow G plusser succeed in this innovative project!

#ScienceSunday   #ScienceEveryday   #SciSunRR  

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Science Mystery Photo: Are these the pages of an ancient book?

Science Mystery Photo: Are these the pages of an ancient book? Flaming rivulets of lava? Go ahead and take a wild guess. 

Hint: These are extraordinarily efficient assembly lines producing up to 31,000 “products” per second or 2.7 billion per day! The special arrangement seen in the photos increases the surface area of the “factories” by 20 fold, with optimum spacing for maximum efficiency. 

Cool Fact: The products of this factory are released by a mechanism known as surface tension catapult, achieving speeds of  1.8 m per sec, although they only need to be ejected about 1 mm or so. 

Shhh! Do you already know what this is? Don’t be a spoilsport, be a fun guy (or gal!). Share an interesting fact about it in the comments. We’ll all be wiser in the end. 

Photo credits: Brian J. Kelly, Kip Taylor-Brown and Claudio Pia

#iseetheworldwithscience   #ScienceSunday  

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Rattler!

Rattler!  Did you know that the western diamondback rattlesnake Crotalus atrox can rattle its tail continuously for hours at frequencies approaching 90 Hz (90 times per sec)? This is twice as fast as a hummingbird’s wings

Nailing the Noise: The tail-end of the rattlesnake has a series of hollow “buttons” linked together, each made of keratin (found in our nails) and modified from the snake’s scales. At birth, there is only one pre-button, but each time a snake sheds its skin, another button emerges at the end. It’s a myth that one can tell the age of a rattlesnake from the number of buttons, because a snake may molt variably in a year and the buttons do break off with use.  

Sound production in animals, is energetically expensive. But the rattler is an evolutionary marvel, optimized for minimal cost and maximal efficiency (for the aficionados, only 0.015 micromoles ATP consumed per gram muscle per twitch). Surprisingly, energy use is independent of temperature and rate of rattling. There are six sets of tailshaker muscles, arranged at 45 degree angles to the axis of the tail. All six are active during rattling, with muscles on one side contracting while those on the other side relax. This out of phase contraction generates an oscillating motion seen in the gif image

Once you’ve heard a live rattler, you’ll never forget it, says Gnotic Pasta, who has plenty of snake stories to share. Do you have any cool facts or anecdotes about rattlers? Also check out Buddhini Samarasinghe scary post on Bite Reflex of a Snake here: http://goo.gl/Lz7oBN

▶ BBC Video (3:50 min) on high speed filming of the rattle (look behind the rattle for the forked tongue darting out!): Slow motion rattlesnake – Slo Mo #3 – Earth Unplugged

▶ Great basin rattlesnake Crotalus viridis lutosus filmed by our intrepid G plusser Gnotic Pasta  :  http://vimeo.com/64675533

▶ REF (old, but free): Structural correlates of speed and endurance in skeletal muscle: the rattlesnake tailshaker muscle. Schaeffer et al. http://jeb.biologists.org/content/199/2/351.long

H/T to Amy Robinson Sterling  for sharing the gif that inspired this post (http://goo.gl/pzi4Yv). 

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Play of Color: Imagine a gem so iridescently beautiful that a phrase, play of color , is coined just to describe it.

Play of Color: Imagine a gem so iridescently beautiful that a phrase, play of color , is coined just to describe it. How does an ordinary sludge of sand and water, boringly described as hydrated silicon dioxide (SiO2. nH2O), express every color in the spectrum of light?

Precious opal is formed when a solution of silica seeps through cracks in a rock very slowly : at a rate of one centimetre thickness every five million years. Under pressure, spheres of silica 150-300 nanometers wide, deposit in crystalline arrays. This regular packing, spaced close enough to the wavelength of light, has the effect of a diffraction grating, and the scattered light can be described by Bragg’s Law. Nearly all the earth’s supply of precious opal comes from Australia, formed in the Cretaceous period, more than a hundred million years ago. 

Eric the Pliosaur: Now imagine a massive thick necked beast that once cruised through the Late Jurassic oceans, with a jaw four times stronger than T. rex and 10 times more powerful than any living creature. 150 million years later, our pliosaur has been “opalized” to an iridescent sheen, his fragments discovered by a lucky miner in Australia’s Coober Pedy and sold for $250,000 USD to a wealthy businessman who subsequently lost his fortune.  Christened Eric the Pliosaur by a mischievous archaeologist who was asked to put the bones together, after Monty Python’s Eric the Half a Bee, the fossil turned out to have a fish inside its belly, fittingly named Wanda. After a public campaign, Eric was eventually purchased for display by the Australian Museum.  What a thrilling journey for Eric. 

► Musical accompaniment: Monty Python – Eric the Half-a-Bee (1972)  

Half a bee, philosophically, must ipso facto half not be .

But half the bee has got to be, vis-à-vis its entity – d’you see?

But can a bee be said to be or not to be an entire bee

when half the bee is not a bee, due to some ancient injury?

► Pliosaurus: http://en.wikipedia.org/wiki/Pliosaurus

► Opalized Fossils: http://www.australianopalcentre.com/fossils.php

#ScienceSunday   #fossilfriday  

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Waterproofin’ with Hydrophobin

Waterproofin’ with Hydrophobin

● Did you know that on average, there are between 1,000 and 10,000 fungal spores in every cubic meter of air? You breathe between 10 and 20 cubic meters of air every day, and every breath contains between 1 and 10 spores, of many different types. 

● These spores have a secret to staying dry and airborne: they are covered by a unique coat protein called hydrophobin, that repels water, but allows gases to exchange, like a botanical GORE-TEX. One side of the layer is water-loving, and the other is as repellent to water as Teflon or paraffin.

● Molecules of hydrophobin self-assemble to form a “rodlet” pictured in the inset, that has surprising similarity to amyloid fibrils found in plaques in the brains of Alzheimer’s patients. So not only could this protein lead to better design of nanoparticles (e.g., for drug delivery), but it may help understand a debilitating disease. 

Image: The fungus Emericella nidulans  (http://goo.gl/OivWNE) is covered by rodlets of the protein hydrophobin (inset; http://goo.gl/Ca1JZz ) which makes the spores waterproof.

REF (open access): Hydrophobins: unique fungal proteins Bayry et al. (2012)  http://goo.gl/gpzAbA

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See Me

See Me

Are you ready to solve this week’s science mystery picture and pick up the latest in research along the way? If you know the identity of this object, don’t give it away , but share some interesting (or obscure!) fact about it. Don’t be shy, let your imagination fly. 

Hint: This object has the fastest response to light in the biological world.

Why is this cool? A recent study revealed the unexpected finding that the initial response to light was mechanical: light triggered tiny (less than one micrometer) synchronized contractions in this array that then opened mechano-sensitive ion channels to change distribution of electric charge across the surface. This form of signaling is known as mechanotransduction and is faster than more conventional chemical signaling. Do you know of a human sense that uses mechanical signaling? 

Image Detail: False colored scanning electron micrograph that is magnified 2,500 times if printed at 10 cm. 

Inspiration for Title: THE WHO – See Me, Feel Me – Listening to You (1975)

#ISeeTheWorldWithScience     #ScienceSunday  

[Answer: http://goo.gl/JgMl3o ]

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